Human Genetics: Interpreting our past from genomic information

Other newsworthy papers include Renewable cell therapy for diabetes inches closer from Nature Biotechnology and Treatment-resistant depression might be in the genes from Neuropsychopharmacology.

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Human Genetics: Interpreting our past from genomic information

Humans are keenly interested in their origins, and we now have more DNA information than ever to help us to reconstruct our genetic history. Two papers in this week’s Nature delve into the rapidly expanding databank to produce new nuggets of information.

Carlos Bustamante and colleagues combine large data sets for the American population to reveal that — for their sample at least — European–American populations have more potentially damaging mutations per variable DNA site than African–American populations. Given the large amount of data used, their discovery settles a debate about the number of these damaging mutations in human populations, and supports the idea that European–Americans as a whole, and not just specific isolated groups, went through a more recent population ‘bottleneck’ than did African–Americans.

Andrew Singleton, Noah Rosenberg and colleagues characterize more than 500,000 DNA markers in the human genome, using 485 volunteers from the Human Genome Diversity Project. They describe the extent of variations across 29 different populations, from Africa, through Europe and the Middle East, through central to South-East Asia, to Oceania and the Americas. Their data resolution is nearly two orders of magnitude greater than previous assessments of human populations and includes both single base changes and changes in larger chunks called copy-number variants. Comparison of these two types of genetic variation enables an increasingly accurate assessment of the complete structure of the human family tree.

CONTACT

Carlos Bustamante (Cornell University, Ithaca, NY, USA)
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Andrew Singleton (National Institute on Aging, Bethesda, MD, USA)
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Noah Rosenberg (University of Michigan, Ann Arbor, MI, USA)
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Renewable cell therapy for diabetes inches closer

DOI: 10.1038/nbt1393

Researchers have converted human embryonic stem (ES) cells into cells that release insulin in response to glucose and alleviate a diabetes-like condition in mice. With further research and development, this approach, reported online in Nature Biotechnology, could lead to a renewable source of cells for the treatment of diabetes.

Type 1 diabetes and some forms of type 2 diabetes involve the loss of pancreatic ‘beta’ cells, which regulate blood glucose (sugar) levels by releasing insulin. In previous work, Emmanuel Baetge and colleagues described a method for driving human ES cells part of the way along the developmental path of the pancreas to becoming beta cells. The resulting cells could not carry out the key function of mature beta cells, which is to release insulin in response to glucose.

In their new study, Baetge’s team shows that if immature pancreatic cells derived from human ES cells are transplanted into mice, in 1–3 months they will develop into glucose-responsive, insulin-secreting cells. These in vivo–matured cells are able to regulate the blood glucose levels of mice whose own beta cells have been destroyed by a chemical treatment—an animal model that mimics some forms of diabetes. The blood glucose control achieved is of similar effectiveness to that obtained by transplanted human islets.

The principle of treating diabetes by transplantation of pancreatic beta cells (within islets) has been demonstrated using the so-called Edmonton protocol. Thus far, this therapy has relied on cells from donor pancreases. Because the supply of such cells is very limited, there is great interest in developing alternative sources of beta cells, including cells derived from human ES cells.

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Emmanuel Baetge (Novocell Inc, San Diego, CA, USA)
Tel: +1 858 455 3555; E-mail: [email protected]

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Treatment-resistant depression might be in the genes

Variation in the gene coding for the potassium channel TREK1 may explain why some patients with depression do not respond to commonly prescribed antidepressants. If confirmed, this finding, reported online this week in the journal Neuropsychopharmacology, could lead to better ways of identifying and treating patients unlikely to benefit from conventional drug regimens.

Roy Perlis and colleagues studied the genes of patients who did not respond to an initial trial of selective serotonin reuptake inhibitors (SSRIs). Of these patients, they found that those with a common variation in the gene for TREK1, often failed to respond to one or two subsequent treatments. SSRIs are known to inhibit TREK1 and mice lacking this channel are resistant to depression. These results suggest TREK1 could regulate one’s response to antidepressants.

While further research is necessary to determine how these variations interfere with treatment, this study is one of the first to examine the genetic underpinnings of treatment resistant depression, a prevalent and costly disease with a poor prognosis.

Author contact:

Roy Perlis (Massachusetts General Hospital, Boston, MA, USA)
Tel: +1 617 726 7426; E-mail: [email protected]

Editorial contact:
Diane Drexler (Neuropsychopharmacology, Nashville, TN, USA)
Tel: +1 615 324 2371; E-mail: [email protected]

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Published: 20 Feb 2008

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