Arsenic risk maps for Southeast Asia

The Irrawaddy Delta, Myanmar is a high-risk area for groundwater contamination with arsenic, suggests research published online this week in Nature Geoscience.Other papers include A common inflammatory pathway in silicosis and Alzheimer’s, Genetic risk factor for osteoarthritis and Shells ruled by mass extinctions

NATURE RESEARCH JOURNALS PRESS RELEASE

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Geoscience: Arsenic risk maps for Southeast Asia

Immunology: A common inflammatory pathway in silicosis and Alzheimer’s

Genetics: Genetic risk factor for osteoarthritis

And finally… Geoscience: Shells ruled by mass extinctions

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· Geographical listing of authors

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[1] Geoscience: Arsenic risk maps for Southeast Asia
DOI: 10.1038/ngeo254

The Irrawaddy Delta, Myanmar is a high-risk area for groundwater contamination with arsenic, suggests research published online this week in Nature Geoscience. By inferring arsenic levels in groundwater from the Earth’s surface properties, the researchers present an arsenic risk map for Southeast Asia.

Michael Berg and co-authors created a statistical model that links geological features and properties of the surface soil to the risk of arsenic contamination in groundwater. They independently verified their model with a field survey in a region of southern Sumatra, Indonesia, where arsenic levels had not previously been measured. The resulting arsenic risk shows several known sites of contamination, and also reveals high risk zones in Sumatra and the Irrawaddy Delta of Myanmar, where no measurements of arsenic in groundwater are available.

Author contact:
Michael Berg (Eawag, Swiss Federal Institute of Aquatic Science and Technology, Zurich,
Switzerland)
Tel: +41 44 823 5078; E-mail: [email protected]

[2] & [3] Immunology: A common inflammatory pathway in silicosis and Alzheimer’s
DOI: 10.1038/ni.1631
DOI: 10.1038/ni.1636

Two different chemical agents, one associated with Alzheimer’s, the other with a severe lung disease, cause inflammation in the same way, reports two studies published online this week in Nature Immunology. This finding could provide a therapeutic target for the treatment of these diseases.

Many structurally diverse molecules, including bacterial toxins and various crystals such as silicon dioxide that cause silicosis in the lungs, induce inflammation by activating a protein complex inside cells called the inflammasome. Groups led by Eicke Latz and Douglas Golenbock show that silicon dioxide crystals and the form of beta-amyloid protein linked to Alzheimer’s disease are taken up by cells in a way that produces inflammation. This process involves seepage of the cathepsin B protein from compartments called lysosomes, which destroy cellular debris. The release of cathepsin B triggers the uncontrolled immune responses associated with silicosis and Alzheimer’s disease.

Characterizing this signalling cascade, which is very likely to be associated with other inflammatory diseases such as gout, may thus provide a common target for treatment of a myriad of conditions.

Author contacts:
Eicke Latz (University of Massachusetts Medical School, Worcester, MA, USA)
Tel: +1 508 856 5889; E-mail: [email protected] Author paper [2]

Douglas Golenbock (University of Massachusetts Medical School, Worchester, MA, USA)
Tel: +1 508 856 5980; E-mail: [email protected] Author paper [3]

[4] Genetics: Genetic risk factor for osteoarthritis
DOI: 10.1038/ng.176

Variation in a gene that is expressed in cartilage is associated with increased risk of osteoarthritis, according to a study published online this week in Nature Genetics. Osteoarthritis is the most common form of arthritis, and is characterized by joint pain owing to breakdown of the cartilage that cushions the joints.

Shiro Ikegawa and colleagues carried out a genome-wide association study of Japanese individuals with and without osteoarthritis, and identified variants in a gene called DVWA that are associated with increased risk of the disease. These associations were replicated in a separate Japanese population, as well as in a Chinese group.

Although the function of DVWA is unknown, the authors show that it binds to another protein called beta-tubulin, and that this binding is weakened by the variants that are associated with elevated risk of osteoarthritis. Beta-tubulin contributes to the formation of subcellular structures called microtubules, which, among other things, are known to regulate the production of cartilage. The authors propose that DVWA might modulate this activity of beta-tubulin, which could explain its association with osteoarthritis.

Author contact:
Shiro Ikegawa (Center for Genomic Medicine, RIKEN, Tokyo, Japan)
Tel: +81 3 5449 5393; E-mail: [email protected]

[5] And finally… Geoscience: Shells ruled by mass extinctions
DOI: 10.1038/ngeo251

The skeletal make-up of marine calcareous organisms such as corals and molluscs throughout geologic time is controlled by recovery from mass extinctions, rather than global changes in ocean chemistry. Previous work had suggested that changes in the magnesium content of the oceans controlled what mineral the animals used to create skeletons.

Marine calcifying organisms secrete shells of either the aragonite or calcite forms of calcium carbonate, depending on the organisms’ physiology. In the modern ocean, which favours aragonite, less than 20% of organisms secrete calcite.

Online in Nature Geoscience this week, Wolfgang Kiessling and colleagues used large palaeontology databases to examine this relationship over the past 500 million years. They find that the percentage of calcite secretors has a stronger relationship with mass extinctions and recovery periods than with ocean chemistry. The authors suggest that evolutionary fate of groups of marine calcifyers strongly depends on selective recovery from mass extinctions, rather than periodic changes in ocean chemistry.

Author contact:
Wolfgang Kiessling (Humboldt University, Berlin, Germany)
Tel: +49 30 2093 8576; E-mail: [email protected]

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Items from other Nature journals to be published online at the same time and with the same embargo:

NATURE CELL BIOLOGY (http://www.nature.com/naturecellbiology)

[6] The auxin influx carrier LAX3 promotes lateral root emergence
DOI: 10.1038/ncb1754

NATURE CHEMICAL BIOLOGY (http://www.nature.com/nchembio)

[7] An integrated platform of genomic assays reveals small-molecule bioactivities
DOI: 10.1038/nchembio.100

NATURE GEOSCIENCE (http://www.nature.com/ngeo)

[8] Mechanisms for retention of bioavailable nitrogen in volcanic rainforest soils
DOI: 10.1038/ngeo252

NATURE GENETICS (http://www.nature.com/naturegenetics)

[9] Critical function of Prdm14 for the establishment of the germ cell lineage in mice
DOI: 10.1038/ng.186

[10] Hypomethylation of multiple imprinted loci in individuals with transient neonatal diabetes is associated with mutations in ZFP57
DOI: 10.1038/ng.187

NATURE IMMUNOLOGY (http://www.nature.com/natureimmunology)

[11] An essential function for beta-arrestin 2 in the inhibitory signaling of natural killer cells
DOI: 10.1038/ni.1635

NATURE MATERIALS (http://www.nature.com/naturematerials)

[12] The role of metal nanoparticles and nanonetworks in alloy degradation
DOI: 10.1038/nmat2227

[13] Ordered silicon vacancies in the framework structure of the zeolite catalyst SSZ-74
DOI: 10.1038/nmat2228

[14] Resonant bonding in crystalline phase-change materials
DOI: 10.1038/nmat2226

Nature MEDICINE (http://www.nature.com/naturemedicine)

[15] Adenovirus-mediated gene expression imaging to directly detect sentinel lymph node metastasis of prostate cancer
DOI: 10.1038/nm.1727

NATURE METHODS (http://www.nature.com/nmeth)

[16] Yeast Barcoders: A chemogenomic application of a universal donor strain collection carrying barcode identifiers
DOI: 10.1038/nmeth.1231

[17] A comprehensive strategy enabling high-resolution functional analysis of the yeast genome
DOI: 10.1038/nmeth.1234

[18] Improving membrane voltage measurements using FRET with new fluorescent proteins
DOI: 10.1038/nmeth.1235

NATURE NANOTECHNOLOGY (http://www.nature.com/nnano)

[19] Control of enhanced Raman scattering using a DNA-based assembly process of dye-coded nanoparticles
DOI:10.1038/nnano.2008.189

Nature NEUROSCIENCE (http://www.nature.com/natureneuroscience)

[20] The stress hormone corticosterone conditions AMPA receptor surface trafficking and synaptic potentiation
DOI: 10.1038/nn.2150

[21] Cell type–specific regulation of DARPP-32 phosphorylation by psychostimulant and antipsychotic drugs
DOI:10.1038/nn.2153

[22] Neurons born in the adult dentate gyrus form functional synapses with target cells
DOI: 10.1038/nn.2156

[23] Patches of face-selective cortex in the macaque frontal lobe
DOI: 10.1038/nn.2158

NATURE PHOTONICS (http://www.nature.com/nphoton)

[24] Robust photonic entanglement distribution by state-independent encoding onto decoherence-free subspace
DOI:10.1038/nphoton.2008.130

[25] A hybrid plasmonic waveguide for subwavelength confinement and long-range propagation
DOI:10.1038/nphoton.2008.131

[26] Enhanced light out-coupling of organic light-emitting devices using embedded low-index grids
DOI:10.1038/nphoton.2008.132

Nature PHYSICS (http://www.nature.com/naturephysics)

[27] Heavy electrons and the symplectic symmetry of spin
DOI: 10.1038/nphys1024

[28] A pumped atom laser
DOI: 10.1038/nphys1027

[29] Continuous-variable quantum cryptography using two-way quantum communication
DOI: 10.1038/nphys1018

Nature STRUCTURAL & MOLECULAR BIOLOGY (http://www.nature.com/natstructmolbiol)

[30] Fission yeast SWI/SNF and RSC complexes show compositional and functional differences from budding yeast
DOI: 10.1038/nsmb.1452

[31] A comprehensive library of histone mutants identifies nucleosomal residues required for H3K4 methylation
DOI: 10.1038/nsmb.1454

[32] Synaptotagmin arrests the SNARE complex before triggering fast, efficient membrane fusion in response to Ca2+
DOI: 10.1038/nsmb.1463

**************************************************************************************************************
GEOGRAPHICAL LISTING OF AUTHORS

The following list of places refers to the whereabouts of authors on the papers numbered in this release. The listing may be for an author's main affiliation, or for a place where they are working temporarily. Please see the PDF of the paper for full details.

ARGENTINA
Buenos Aires: 22

AUSTRALIA
Acton: 28

BELGIUM
Ghent: 6, 8
Overpelt: 10

CANADA:
Calgary: 16
Toronto: 7, 16

CHILE
Chillan: 8
Valdivia: 8

CHINA
Shanghai: 11

DENMARK
Copenhagen: 10
Glostrup: 10

FRANCE
Bordeaux: 20
Marseille: 5
Montpellier: 6

GERMANY
Aachen: 14
Berlin: 5
Bremen: 23
Freiburg: 3
Hannover: 10
Munich: 2
Tubingen: 6

IRELAND
Dublin: 8

ITALY
Camerino: 29

JAPAN
Aichi: 18
Fukuoka: 21
Jiangsu: 4
Kanagawa: 4
Kobe: 9
Kyoto: 9
Miyagi: 24
Osaka: 24
Sagamihara: 4
Saitama: 18, 24
Tokyo: 4, 18

NORWAY
Trondheim: 2

SPAIN
Badajoz: 6

SWEDEN
Stockholm: 21
Umea: 6

SWITZERLAND
Dubendorf: 1
Zurich: 13

TURKEY
Istanbul: 10

UNITED KINGDOM
Cambridge: 10, 14, 30
Carlisle: 10
Exeter: 10
Glasgow: 19
Harrow: 10
Newcastle: 10
Norwich: 6
Nottingham: 6
Salisbury: 10
Southampton: 10
York: 29

UNITED STATES OF AMERICA

California
Berkeley: 25
Irvine: 22
La Jolla: 22
Los Angeles: 15
Palo Alto: 7
Pasadena: 13
Richmond: 13
San Diego: 16
San Francisco: 7, 17

Illinois
Argonne: 12

Indiana
Bloomington: 6

Massachusetts
Boston: 3, 8, 30
Cambridge: 3, 11, 29
Worcester: 2, 3

Michigan
Ann Arbor: 26

Missouri
Kansas City: 31
St Louis: 6

New Jersey
Piscataway: 27
Princeton: 26

New York
New York: 21

North Carolina
Durham: 6

Wisconsin
Madison: 32

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Tel: +44 20 7843 4658; E-mail: [email protected]

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Published: 13 Jul 2008

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